PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006381-PA
Common NameOsI_07407
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 243aa    MW: 25495.4 Da    PI: 10.4514
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006381-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.22.2e-2328127173
          trihelix   1 rWtkqevlaLiearremeerlrrgk...........................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                       rWt+qe+l+Lie++r +e r + +                            + +p+W++v++++r++g+er+++qC+++w+nl+++ykkik+
  BGIOSGA006381-PA  28 RWTRQEILVLIEGKRMVEGRGGGRGgrgraaaaaaaaaaaaaggsggeaavaALEPKWAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIKD 120
                       8**************999988843224557778888999999999999999888*************************************** PP

          trihelix  67 gekkrts 73 
                       +e+++ s
  BGIOSGA006381-PA 121 NEISGLS 127
                       **99854 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-62840IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-678111IPR009057Homeodomain-like
PfamPF138371.0E-883122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSTAGDPAAA AAAAAAATPS GRAPRLPRWT RQEILVLIEG KRMVEGRGGG RGGRGRAAAA  60
AAAAAAAAAG GSGGEAAVAA LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKD  120
NEISGLSANG FTSTSKDKQP EQQAASRGTP PPPPPTTQQQ QGGQKRRRAD DDEEEEDDGR  180
RGGELQSKLV EILDRSSRMV AAQLEAQNAN SRLDREQRRD QAASLAVVLG RLADALGRIA  240
DKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8354750.0CT835475.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038B06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623609.12e-41PREDICTED: trihelix transcription factor ASR3
SwissprotQ8VZ208e-31ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLB8AIN01e-170B8AIN0_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA006381-PA1e-169(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-26Trihelix family protein